The complete QM6a genome compared to the HiC draft genome (Marie-Nelly H, et al. 2014, Nature Commun. 5:5695). The top tracks represent the graphs of GC contents (window size 5000 bp) of seven telomere-to-telomere chromosomes (ChI-ChVII). The seven centromeres (cen1-cen7; in blue) are located at the longest AT-rich blocks in each chromosome. The telomeres (tel) of the right (R) and left (L) arms in each chromosome are indicated (in grey). The carbohydrate-active enzyme (CAZyme) genes (in red) and several genes involved in DNA repair, light response and sexual development (in black) are indicated. The rDNA (18S-5.8S-26S) locus on ChVI is indicated in orange. The bottom tracks represent the seven superscaffolds (in green) and four short contigs (in blue) of the HiC draft genome. Chromosomal regions with incorrect orientation (i.e., inversion errors) are indicated in pink.